Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs8107594 chr19:9835957 G/C 4.46E-6 501 31.45 32.9 32.9 KM Plot
THCA rs8132260 chr21:38372997 G/A 8.23E-5 483 31.87 31 28.23 KM Plot
THCA rs845133 chr10:90410292 A/G 3.01E-5 498 32.9 31.33 26.73 KM Plot
THCA rs881816 chr4:3365366 A/G 5.39E-5 493 26.45 31.7 33.08 KM Plot
THCA rs881817 chr4:3365381 A/G 0.000137 492 26.45 32.43 32.9 KM Plot
THCA rs885593 chr10:540161 C/G 7.93E-5 503 8.1 40.57 31.3 KM Plot
THCA rs890738 chr5:93081386 T/A 9.7E-5 482 31.45 32.5 27.23 KM Plot
THCA rs891406 chr3:122513964 A/C 6.36E-6 499 20.87 26.73 31.93 KM Plot
THCA rs896739 chr2:181338844 C/G 0.000114 503 32.38 31.33 31.43 KM Plot
THCA rs903703 chr8:58128302 C/A 6.68E-5 498 31.15 35.88 34.8 KM Plot
THCA rs919501 chr3:122444236 A/G 6.66E-6 498 20.87 26.57 31.98 KM Plot
THCA rs9284239 chr13:108892421 C/G 6.44E-6 503 31.47 31.98 30.57 KM Plot
THCA rs930123 chr3:122433562 G/A 7.21E-6 494 20.87 26.57 32.07 KM Plot
THCA rs930412 chr3:139262325 A/G 5.3E-10 499 31.47 33.97 19.32 KM Plot
THCA rs9321367 chr6:133084359 G/T 9.57E-10 496 31.7 30.53 33.1 KM Plot